Fecal carriage of multi-drug resistant and extended spectrum β-lactamases producing E. coli in household pigeons,Bangladesh

Antibiotic resistance and ESBL constitute a risk to human and animal health. Birds residing close to humans could mirror the spectrum of human associated antibiotic resistance. Household pigeons were screened in Bangladesh to shed light on human associated, as well as, environmental antibiotic resistance. Escherichia coli from pigeons (n = 150) were tested against 11 antibiotics. 89% E. coli isolates were resistant to one or more critically important human antibiotics like ampicillin, cefadroxil, mecillinam, ciprofloxacin, gentamicin and tigecycline. No carbapenamase-producers were detected and the lower ESBL prevalence (5%) in pigeons. ESBL-producing E. coli isolates had bla_CTX-M-15 genes. Pigeons shared some bacterial clones and had bird associated sequence types like E. coli ST1408. Fecal carriage of bacteria resistance of critically important human antibiotics, together with examples of shared genotypes among pigeons, indicate the human-birds and bird to bird transmissions are important in the epidemiology of antibiotic resistance.     

Putative human and avian risk factors for avian influenza virus infections in backyard poultry in Egypt

Highly pathogenic influenza A virus subtype H5N1 causes significant poultry mortality in the six countries where it is endemic and can also infect humans. Egypt has reported the third highest number of poultry outbreaks (n = 1084) globally. The objective of this cross-sectional study was to identify putative risk factors for H5N1 infections in backyard poultry in 16 villages in Damietta, El Gharbia, Fayoum, and Menofia governorates from 2010–2012. Cloacal and tracheal swabs and serum samples from domestic (n = 1242) and wild birds (n = 807) were tested for H5N1 via RT-PCR and hemagglutination inhibition, respectively. We measured poultry rearing practices with questionnaires (n = 306 households) and contact rates among domestic and wild bird species with scan sampling. Domestic birds (chickens, ducks, and geese, n = 51) in three governorates tested positive for H5N1 by PCR or serology. A regression model identified a significant correlation between H5N1 in poultry and the practice of disposing of dead poultry and poultry feces in the garbage (F = 15.7, p < 0.0001). In addition, contact between domestic and wild birds was more frequent in villages where we detected H5N1 in backyard flocks (F = 29.5, p < 0.0001).     

Prenatal Metanephrogenesis of The Camel: Morphological Evidence of Epithelial–Mesenchymal Interaction

The present investigation examined histogenesis of epithelial, stromal and angiogenic elements of the prenatal camel permanent or metanephric kidney. The primitive metanephros was first observed at the 13‐mm crown vertebral rump length (CVRL) stage as an ovoid structure composed of a centrally located epithelial ureteric bud and peripheral circumscribed masses of undifferentiated mesenchymal cells. The first morphological evidence of glomerulogenesis was observed at the 28‐mm CVRL stage. Developing renal corpuscles became obvious at the 35‐mm CVRL stage. At the 60‐mm CVRL stage, the epithelial renal pelvis gave rise to tubular branches that extended towards the cortical zone. These branches represented the presumptive collecting ducts. Differentiation of renal tubules into the proximal and distal convoluted tubules was observed at the 95‐mm CVRL stage. At the 130‐mm CVRL stage, the renal medulla was clearly delineated into medullary pyramids, which in association with the corresponding cortical caps formed the morphological basis of the renal lobar formation. A gradual nephrogenic decline was noticed from the 940‐mm CVRL on; however, the process of nephrogenesis persisted throughout all the studied foetal stages.     

落叶型大丽轮枝菌T-DNA插入突变体库的构建

采用ATMT技术建立大丽轮枝菌落叶型菌株XJ2008菌株的T-DNA插入突变体文库,共获得6 043个突变体。从中随机挑选104个突变体,以野生型XJ2008菌株为参照,评价其致病性、菌落生长速率、分生孢子及微菌核的产生能力等。结果表明,有12.5%的突变体丧失产孢能力,4.8%的突变体的生长速率显著减慢,8.7%的突变体的生长速率显著加快,12.5%的突变体丧失产生微菌核的能力,47.1%的突变体的致病性显著低于野生型菌株XJ2008,且突变体2-736、2-740、2-745的病情指数分别约为野生型菌株XJ2008的0.184、0.168和0.197倍。该突变体库突变体遗传稳定性好,性状多样性丰富。     

Conservation of a Tropical Wet Semi-evergreen Forest Ecosystem by an Indigenous Community in the Bandarban Hill District of Bangladesh: The Role of Intervention

Indigenous communities in the Chittagong Hill Tracts (CHT) of Bangladesh had been conserving small patch of forests, commonly called village common forests (VCFs), especially for drinking water and non-timber forest produce. The size of VCFs has been decreasing, due to increasing population and conversion of forests for shifting cultivation. To restore the degraded forest resources and conserve the forest ecosystems in the VCF of the CHT, an intervention was undertaken in Bandarban, Bangladesh by Arannayk Foundation, an organization established jointly by the Government of Bangladesh and the United States of America. A training program on leadership, organizational development and alternative income generating activities was implemented to build the capacity of the members of the VCF management committee. The impact of the interventions was measured at the end of third year. Incomes of VCF-dependent communities were found to increase with resultant reduction of their dependence on VCFs. The intervention encouraged women’s participation in forest management and facilitated a written format of the constitution of the VCF management. The study identified that more training and awareness-raising activities are needed to ensure sustainability of the interventions. Mobilizing funds for the communities for sustainable alternative livelihoods was found effective. Appropriate compensation for conservation was found to make the restoration and conservation activities sustainable.     

Effect of increasing levels of seven tree species extracts added to a high concentrate diet on in vitro rumen gas output

This study was conducted to investigate the effects of increasing levels of extracts of Byrsonima crassifolia, Celtis pallida, Enterolobium cyclocarpum, Fraxinus excelsior, Ficus trigonata, Phoradendrom brevifolium and Prunus domestica on in vitro gas production (GP) and ruminal fermentation of a high concentrate diet. Plant extracts were prepared at 1 g dry matter (DM)/8 mL of solvent mixture (methanol : ethanol : water, 1:1:8) and added at levels of 0, 0.6, 1.2 and 1.8 mL/g DM of a high concentrate diet. In vitro GP was recorded at 2, 4, 6, 8, 10, 12, 24, 48 and 72 h of incubation. Increasing addition of extracts linearly increased (P < 0.001), the GP₂₄, GP₄₈ and GP₇₂ (mL/g DM), and linearly decreased (P < 0.001), the discrete GP lag time. Moreover, increasing extract doses linearly increased (P < 0.001) the asymptotic GP and decreased (P < 0.001) the rate of GP. GP₆ was not impacted by treatments and GP₁₂ increased linearly (P = 0.01) with increasing addition of extracts. Rumen pH declined linearly (P < 0.05) with increasing doses of extracts added. As no interactions (P > 0.05) occurred between the extracts and doses, it could be conclude that all extracts positively modified rumen fermentation at doses of 1.2 to 1.8 mL extract/g diet DM.     

Alternate Two Different Modes of Actions of Green Chemicals to Combat Batrachedra amydraula Meyrick and Cadra cautella Walk on Date Palm Fruit,Egypt

Alternate two different modes of actions of green chemicals： spinosad ＆ methoxyfenozide to combat the lesser date moth, Batrachedra amydraula and the Almond moth, Cadra cautella Walk on dates in Dakhla Oasis, New Valley, Egypt were done in 2010 and 201 I. Based on infestation of the early insect pest B. amydraula, the three-rotation program with basic 1st spray of spinosad 24 SC at 20 mL/100 L showed insignificant difference. Based on minimum effective rotation doses, alternating spinosad 24 SC at 20 mL/100 L, then methoxyfenozide 24 SC at 15 mL/100 L with two-week interval showed zero infestation and 1.8% at the last sample of 2010 and 2011, respectively. Based on infestation of the late insect pest, Cadra spp., tlhe same previous trend of the three-rotation results. Based on minimum effective rotation doses, alternating spinosad 24 SC at 20 mL/100 L, then methoxyfenozid 24 SC at 15 mL/100 L with three-week interval indicated less than 1% and 1% infestation during harvest for 2010 and 201 l, respectively. The last reflected important value when storing the fruit. Both products proved to be working under dry hot high temperatures.     

Soil Salinization in Some Irrigated Areas of the Kingdom of Bahrain

Monitoring and assessment of agricultural land degradation is of vital importance for better land and water management planning and reclamation. It requires setting baseline information and basic analysis at specific time and space. About 33 geo-referenced soil sampling spots were selected in two agricultural production locations in the Kingdom of Bahrain to assess the status and preliminary causes of land degradation. Soil samples were taken from 13 sites in Diraz location while 19 samples were taken from Budayyi location. The samples were taken to 90 cm depth at 30 cm intervals. Standard procedures were followed to determine soil physiochemical properties. In addition, field observations on farm condition, distance from the sea, method of irrigation and irrigation water source were taken. Some of the soil samples were deliberately taken from outside the irrigated basins among trees compared with samples taken from inside the actively growing area for comparison. The results indicated that the salinity level was significantly （P 〈 0.001） higher at the 0-30 cm soil depth compared with 30-60 cm or 60-90 cm depths in both locations. The distance from the sea did not show clear correlation with surface soil salinity in Budayyi area compared with Diraz. Both locations showed significantly higher salinity levels on samples taken outside the actively growing areas compared with those taken from within. The effect is more prominent at the 0-30 cm depth. The observed variability on salinity levels may be attributed to farm management practices and deteriorating quality of ground water. Thus, agricultural land degradation in Bahrain cannot be attributed to ground water deterioration alone. The use of tertiary treated sewage water （TSE） may ease the pressure on ground water, but the pH of the TSE should be carefully monitored and managed with proper studies on leaching requirements to avoid further salinity complications.     

Hydromorphological rehabilitation improves channel morphology,instream biotopes,and macroinvertebrate communities,and thus enhances the conservation of an urban river

1. Many river rehabilitation projects have been criticized for failing to meet their goals or for being insufficiently monitored. There is, therefore, an urgent need to develop robust approaches for assessing treatment efficacy and thus guide the increasing investment in rehabilitation.
2. Instream biotopes (formerly called ‘functional habitats’ or ‘mesohabitats’ by different authors) and their macroinvertebrate assemblages were used to assess the effectiveness of entire-channel hydromorphological rehabilitation of a 1.8-km stretch of a lowland stream through the town of Market Harborough, Leicestershire, UK.
3. The project successfully enhanced the physical diversity, measured in the rehabilitated reach as the coefficients of variability for channel water depth and width, wet surface area, number of instream biotopes, and biotope diversity.
4. The project also enhanced the biodiversity conservation value, measured as macroinvertebrate total density, total biomass, richness, diversity, Ephemeroptera, Plecoptera, and Trichoptera (EPT) richness, EPT diversity, EPT count%, and EPT biomass%, all of which significantly increased following rehabilitation. Chironomidae count% and biomass% significantly decreased following rehabilitation. Rehabilitation was also successful in significantly increasing macroinvertebrate shredder, scraper, and filter-feeder group density.
5. Changes in the macroinvertebrate community metrics in the rehabilitated reach were related significantly to changes in the percentages of cover of instream biotopes and increases in biotope diversity in the rehabilitated reach.
6. Macroinvertebrate structural and functional metrics can provide quantitative data for assessing reach-level rehabilitation outcomes, if samples are collected in a pre-defined sampling protocol stratified at the instream biotope level.
7. The practical implications of this work are that the design of rehabilitation projects, if based upon the recreation of biotope heterogeneity, will succeed in improving biological value and restoring the area to near naturalness if a suitable upstream source of macroinvertebrates for natural recolonization is available. The study shows that the concept of biotopes has an important role to play in river conservation management.

     

Bacterial diversity of tilapia (Oreochromis niloticus) cultured in brackish water in Saudi Arabia

The bacterial flora occurring in brackish pond water, sediment, gills and intestine of healthy tilapia cultured in Saudi Arabia were estimated both quantitatively and qualitatively, and the isolates were identified to genus or species level. Total viable count of bacteria ranged from 1.4±1.5×10³ to 8.6±2.7×10³ cfu ml⁻¹; 1.2±3.1×10⁶ to 7.3±1.1×10⁷ cfu g⁻¹; 8.7±1.9×10⁵ to 2.1±0.9×10⁶ cfu g⁻¹; and 2.8±2.4×10⁷ to 1.0±1.6×10⁸ cfu g⁻¹ in the pond water, sediment, gills and intestine of brackish water tilapia, respectively. In total, 19 bacterial species were identified. The bacteria were predominantly Gram-negative rods (87%). Pond water and sediment bacteria influenced the bacterial composition of gills and intestine of tilapia. In contrast to gill bacteria, more diversification was observed in intestinal bacteria. The predominant (prevalence >10%) bacterial species were Vibrio parahaemolyticus, Vibrio carchariae, Vibrio alginolyticus, Chryseomonas sp., Vibrio vulnificus, and Streptococcus sp. in all the populations with the exception of the sediment population where Streptococcus sp. was replaced by Shewanella putrefaciens. Vibrio spp. (58% of the total isolates) dominated the total bacterial population.